BP_HMMER_TO_TABLE(1) User Contributed Perl Documentation BP_HMMER_TO_TABLE(1) NAME hmmer_to_table - turn HMMER output into tabular format SYNOPSIS hmmer_to_table [-e evaluefilter] [-b bitscorefilter] [--header] [-o outfile] inputfile1 inputfile2 ... DESCRIPTION Comand line options: -e/--evalue evalue -- filter by evalue -b/--bitscore bitscore -- filter by bitscore --header -- boolean flag to print column header -o/--out -- optional outputfile to write data, otherwise will write to STDOUT -h/--help -- show this documentation Not technically a SearchIO script as this doesn't use any Bioperl components but is a useful and fast. The output is tabular output. query sequence/domain (these are flip-flopped for hmmsearch / hmmpfam) query start query end domain/sequence name or PFAM accession hit start hit end score e-value domain/sequence name (these are flip-flopped for hmmsearch / hmmpfam) AUTHOR - Jason Stajich Jason Stajich jason_at_bioperl-dot-org perl v5.14.1 2011-07-22 BP_HMMER_TO_TABLE(1)[top]
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