Bio::Graphics::Glyph::UsercContributed PerBio::Graphics::Glyph::splice_site(3)NAMEBio::Graphics::Glyph::splice_site - The "splice_site" glyph
SYNOPSIS
See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
DESCRIPTION
This glyph was designed to show an inverted "L" representing splice
donors and acceptors. The vertical part of the L points downwards and
is positioned in the center of the range (even if the range is quite
large).
In addition to the usual glyph options, this glyph recognizes:
Option Value Description
----------------------
direction "left" or "right" direction the short part of the L
points
height_fraction 0.0 - 1.0 fractional height of the glyph,
usually a callback that uses the
feature's score to determine its
height
BUGS
Please report them.
SEE ALSO
Bio::Graphics::Panel, Bio::Graphics::Glyph,
Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds,
Bio::Graphics::Glyph::crossbox, Bio::Graphics::Glyph::diamond,
Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot,
Bio::Graphics::Glyph::ellipse, Bio::Graphics::Glyph::extending_arrow,
Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments,
Bio::Graphics::Glyph::heterogeneous_segments,
Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion,
Bio::Graphics::Glyph::primers, Bio::Graphics::Glyph::rndrect,
Bio::Graphics::Glyph::chromosome, Bio::Graphics::Glyph::segments,
Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany,
Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2,
Bio::Graphics::Glyph::translation, Bio::Graphics::Glyph::triangle,
Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD
AUTHOR
Xiaokang Pan <pan@cshl.org>
Copyright (c) 2001 BDGP
This library is free software; you can redistribute it and/or modify it
under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
perl v5.14.12011-07-Bio::Graphics::Glyph::splice_site(3)