BP_RUN_NEIGHBOR(1) User Contributed Perl Documentation BP_RUN_NEIGHBOR(1)NAME
run_neighbor - run Phylip's 'neighbor' program through Bioperl
SYNOPSIS
run_neighbor [-i inputfile] [-o outfilename]
DESCRIPTION
Provide an matrix file to run neighbor on. File should be named of the
forma file.matrix or file.protdist (the ending doesn't matter, but the
program expects a file in the form of (\S+)\.(\S+).
This will run the application 'neighbor' to build a Neighbor-Joining
tree from a protein distance matrix.
AUTHOR
Jason Stajich, jason-AT-open-bio-DOT-org
perl v5.14.1 2011-07-21 BP_RUN_NEIGHBOR(1)