Bio::TreeIO::nhx(3) User Contributed Perl Documentation Bio::TreeIO::nhx(3) NAME Bio::TreeIO::nhx - TreeIO implementation for parsing Newick/New Hampshire eXtendend (NHX) format. SYNOPSIS # do not use this module directly use Bio::TreeIO; my $treeio = Bio::TreeIO->new(-format => 'nhx', -file => 'tree.dnd'); my $tree = $treeio->next_tree; DESCRIPTION This module handles parsing and writing of Newick/New Hampshire eXtended (NHX) format. FEEDBACK Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted viax the web: http://bugzilla.open-bio.org/ AUTHOR - Aaron Mackey Email amackey-at-virginia.edu CONTRIBUTORS Email jason-at-bioperl-dot-org APPENDIX The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ next_tree Title : next_tree Usage : my $tree = $treeio->next_tree Function: Gets the next tree in the stream Returns : Bio::Tree::TreeI Args : none write_tree Title : write_tree Usage : $treeio->write_tree($tree); Function: Write a tree out to data stream in nhx format Returns : none Args : Bio::Tree::TreeI object perl v5.14.1 2011-07-22 Bio::TreeIO::nhx(3)[top]
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