Bio::DB::SeqFeature::SUser:ContributBio::DB::SeqFeature::Store::berkeleydb3(3)NAMEBio::DB::SeqFeature::Store::berkeleydb3-- Storage and retrieval of
sequence annotation data in Berkeleydb files
SYNOPSIS
# Create a feature database from scratch
$db = Bio::DB::SeqFeature::Store->new( -adaptor => 'berkeleydb',
-dsn => '/var/databases/fly4.3',
-create => 1);
# get a feature from somewhere
my $feature = Bio::SeqFeature::Generic->new(...);
# store it
$db->store($feature) or die "Couldn't store!";
DESCRIPTION
This is a faster version of the berkeleydb storage adaptor for
Bio::DB::SeqFeature::Store. It is used automatically when you create a
new database with the original berkeleydb adaptor. When opening a
database created under the original adaptor, the old code is used for
backward compatibility.
Please see Bio::DB::SeqFeature::Store::berkeleydb3 for full usage
instructions.
BUGS
This is an early version, so there are certainly some bugs. Please use
the BioPerl bug tracking system to report bugs.
SEE ALSO
bioperl, Bio::DB::SeqFeature, Bio::DB::SeqFeature::Store,
Bio::DB::SeqFeature::GFF3Loader, Bio::DB::SeqFeature::Segment,
Bio::DB::SeqFeature::Store::memory,
Bio::DB::SeqFeature::Store::DBI::mysql,
AUTHOR
Lincoln Stein <lincoln.stein@gmail.com>.
Copyright (c) 2009 Ontario Institute for Cancer Research
This library is free software; you can redistribute it and/or modify it
under the same terms as Perl itself.
perl v5.14.120Bio::DB::SeqFeature::Store::berkeleydb3(3)